Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato.

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  • Additional Information
    • Publication Year:
      2018
    • Author-Supplied Keywords:
      Arabidopsis thaliana
      Biochemistry
      Biological databases
      Biology and life sciences
      Biotechnology
      Brassica
      Computational biology
      Computer and information sciences
      Data management
      Database and informatics methods
      Eukaryota
      Evolutionary biology
      Evolutionary systematics
      Experimental organism systems
      Fruits
      Gene expression
      Genetics
      Genome analysis
      Genomic databases
      Genomics
      Model organisms
      Organisms
      Phylogenetic analysis
      Phylogenetics
      Plant and algal models
      Plant biotechnology
      Plant genetics
      Plant genomics
      Plant science
      Plants
      Protein domains
      Proteins
      Research and analysis methods
      Research Article
      Taxonomy
      Tomatoes
    • NAICS/Industry Codes:
      NAICS/Industry Codes 111219 Other Vegetable (except Potato) and Melon Farming
      111419 Other Food Crops Grown Under Cover
    • Abstract:
      ATP binding cassette (ABC) transporters are proteins that actively mediate the transport of a wide range of molecules, such as organic acids, metal ions, phytohormones and secondary metabolites. Therefore, ABC transporters must play indispensable roles in growth and development of tomato, including fruit development. Most ABC transporters have transmembrane domains (TMDs) and belong to the ABC protein family, which includes not only ABC transporters but also soluble ABC proteins lacking TMDs. In this study, we performed a genome-wide identification and expression analysis of genes encoding ABC proteins in tomato (Solanum lycopersicum), which is a valuable horticultural crop and a model plant for studying fleshy fruits. In the tomato genome, a total of 154 genes putatively encoding ABC transporters, including 9 ABCAs, 29 ABCBs, 26 ABCCs, 2 ABCDs, 2 ABCEs, 6 ABCFs, 70 ABCGs and 10 ABCIs, were identified. Gene expression data from the eFP Browser and reverse transcription-semi-quantitative PCR analysis revealed their tissue-specific and development-specific expression profiles. This work suggests physiological roles of ABC transporters in tomato and provides fundamental information for future studies of ABC transporters not only in tomato but also in other Solanaceae species. [ABSTRACT FROM AUTHOR]
    • Abstract:
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    • ISSN:
      19326203
    • Accession Number:
      130925339
  • Citations
    • ABNT:
      OFORI, P. A. et al. Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato. PLoS ONE, [s. l.], v. 13, n. 7, p. 1, 2018. Disponível em: . Acesso em: 12 nov. 2019.
    • AMA:
      Ofori PA, Mizuno A, Suzuki M, et al. Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato. PLoS ONE. 2018;13(7):1. http://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=130925339. Accessed November 12, 2019.
    • APA:
      Ofori, P. A., Mizuno, A., Suzuki, M., Martinoia, E., Reuscher, S., Aoki, K., … Shiratake, K. (2018). Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato. PLoS ONE, 13(7), 1. Retrieved from http://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=130925339
    • Chicago/Turabian: Author-Date:
      Ofori, Peter Amoako, Ayaka Mizuno, Mami Suzuki, Enrico Martinoia, Stefan Reuscher, Koh Aoki, Daisuke Shibata, Shungo Otagaki, Shogo Matsumoto, and Katsuhiro Shiratake. 2018. “Genome-Wide Analysis of ATP Binding Cassette (ABC) Transporters in Tomato.” PLoS ONE 13 (7): 1. http://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=130925339.
    • Harvard:
      Ofori, P. A. et al. (2018) ‘Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato’, PLoS ONE, 13(7), p. 1. Available at: http://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=130925339 (Accessed: 12 November 2019).
    • Harvard: Australian:
      Ofori, PA, Mizuno, A, Suzuki, M, Martinoia, E, Reuscher, S, Aoki, K, Shibata, D, Otagaki, S, Matsumoto, S & Shiratake, K 2018, ‘Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato’, PLoS ONE, vol. 13, no. 7, p. 1, viewed 12 November 2019, .
    • MLA:
      Ofori, Peter Amoako, et al. “Genome-Wide Analysis of ATP Binding Cassette (ABC) Transporters in Tomato.” PLoS ONE, vol. 13, no. 7, July 2018, p. 1. EBSCOhost, search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=130925339.
    • Chicago/Turabian: Humanities:
      Ofori, Peter Amoako, Ayaka Mizuno, Mami Suzuki, Enrico Martinoia, Stefan Reuscher, Koh Aoki, Daisuke Shibata, Shungo Otagaki, Shogo Matsumoto, and Katsuhiro Shiratake. “Genome-Wide Analysis of ATP Binding Cassette (ABC) Transporters in Tomato.” PLoS ONE 13, no. 7 (July 26, 2018): 1. http://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=130925339.
    • Vancouver/ICMJE:
      Ofori PA, Mizuno A, Suzuki M, Martinoia E, Reuscher S, Aoki K, et al. Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato. PLoS ONE [Internet]. 2018 Jul 26 [cited 2019 Nov 12];13(7):1. Available from: http://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edb&AN=130925339