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Academic Journal

OTSUCNV: an adaptive segmentation and OTSU-based anomaly classification method for CNV detection using NGS data.

  • Authors : Xie K; School of Computer Science and Technology, Xidian University, Xi'an, 710071, China.; Ge X

Subjects: DNA Copy Number Variations* ; Algorithms*; Humans

  • Source: BMC genomics [BMC Genomics] 2024 Jan 30; Vol. 25 (1), pp. 126. Date of Electronic Publication: 2024 Jan 30.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

On the core segmentation algorithms of copy number variation detection tools.

  • Authors : Zhang Y; Key Laboratory of Biomedical Information Engineering of Ministry of Education and Department of Biomedical Engineering, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, China.; Liu W

Subjects: DNA Copy Number Variations* ; Algorithms*; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/methods

  • Source: Briefings in bioinformatics [Brief Bioinform] 2024 Jan 22; Vol. 25 (2).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

A comparison of algorithms for identifying copy number variants in family-based whole-exome sequencing data and its implications in inheritance pattern analysis.

  • Authors : Ye B; Department of Bioinformatics, School of Basic Medicine, Chongqing Medical University, Chongqing 400016, PR China.; Tang X

Subjects: DNA Copy Number Variations* ; Algorithms*; Humans

  • Source: Gene [Gene] 2023 Apr 20; Vol. 861, pp. 147237. Date of Electronic Publication: 2023 Jan 30.Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

varAmpliCNV: analyzing variance of amplicons to detect CNVs in targeted NGS data.

  • Authors : Kumar AA; Center of Medical Genetics, University of Antwerp/Antwerp University Hospital, Antwerp (Edegem) 2650, Belgium.; Biomedical Informatics, Antwerp University Hospital, Antwerp (Wilrijk) 2610, Belgium.

Subjects: Algorithms* ; DNA Copy Number Variations*; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/methods

  • Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Jan 01; Vol. 39 (1).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

JAX-CNV: A Whole-genome Sequencing-based Algorithm for Copy Number Detection at Clinical Grade Level.

  • Authors : Lee WP; Precision Medicine Center, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China; The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA

Subjects: DNA Copy Number Variations* ; Algorithms*; Humans

  • Source: Genomics, proteomics & bioinformatics [Genomics Proteomics Bioinformatics] 2022 Dec; Vol. 20 (6), pp. 1197-1206. Date of Electronic Publication: 2022 Jan 25.Publisher: Science Press and Elsevier Country of Publication: China NLM ID: 101197608 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Gain-loss-duplication models for copy number evolution on a phylogeny: Exact algorithms for computing the likelihood and its gradient.

  • Authors : Csűrös M; Department of Computer Science and Operations Research, Université de Montréal, C.P. 6128 succursale Centre-Ville, Montréal, Québec H3C 3J7, Canada. Electronic address: .

Subjects: Algorithms* ; DNA Copy Number Variations*; Evolution, Molecular

  • Source: Theoretical population biology [Theor Popul Biol] 2022 Jun; Vol. 145, pp. 80-94. Date of Electronic Publication: 2022 Mar 18.Publisher: Academic Press Country of Publication: United States NLM ID: 0256422 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

SILO: A Computational Method for Detecting Copy Number Gain in Clinical Specimens Analyzed on a Next-Generation Sequencing Platform.

  • Authors : Miller N; Center for Personalized Medicine, NorthShore University Healthsystem, Evanston, Illinois. Electronic address: .; Bouma M

Subjects: Algorithms* ; DNA Copy Number Variations*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: The Journal of molecular diagnostics : JMD [J Mol Diagn] 2021 Oct; Vol. 23 (10), pp. 1241-1248. Date of Electronic Publication: 2021 Aug 05.Publisher: Elsevier Country of Publication: United States NLM ID: 100893612 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Post-selection inference for changepoint detection algorithms with application to copy number variation data.

  • Authors : Hyun S; Department of Data Sciences and Operations, University of Southern California, Los Angeles, California, USA.; Lin KZ

Subjects: Algorithms* ; DNA Copy Number Variations*/DNA Copy Number Variations*/DNA Copy Number Variations*/genetics; Comparative Genomic Hybridization

  • Source: Biometrics [Biometrics] 2021 Sep; Vol. 77 (3), pp. 1037-1049. Date of Electronic Publication: 2021 Jan 27.Publisher: Biometric Society Country of Publication: United States NLM ID: 0370625 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Accucopy: accurate and fast inference of allele-specific copy number alterations from low-coverage low-purity tumor sequencing data.

  • Authors : Fan X; Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.

Subjects: Algorithms* ; DNA Copy Number Variations* ; Neoplasms*/Neoplasms*/Neoplasms*/genetics

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jan 15; Vol. 22 (1), pp. 23. Date of Electronic Publication: 2021 Jan 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

FastClone is a probabilistic tool for deconvoluting tumor heterogeneity in bulk-sequencing samples.

  • Authors : Xiao Y; Department of Computational Medicine and Bioinformatics, Michigan Medicine, University of Michigan, Ann Arbor, MI, USA.; Wang X

Subjects: Algorithms* ; DNA Copy Number Variations*; Neoplasms/Neoplasms/Neoplasms/*genetics

  • Source: Nature communications [Nat Commun] 2020 Sep 08; Vol. 11 (1), pp. 4469. Date of Electronic Publication: 2020 Sep 08.Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN:

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  • 1-10 of  301 results for ""DNA copy number variations""