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Academic Journal

ChatGPT-Enhanced ROC Analysis (CERA): A shiny web tool for finding optimal cutoff points in biomarker analysis.

Authors : Agraz M; Department of Statistics, Giresun University, Giresun, Turkiye.; Division of Applied Mathematics, Brown University, Providence, Rhode Island, United States of America.

Subjects: Software* ; Programming Languages*; Humans

Source: PloS one [PLoS One] 2024 Apr 10; Vol. 19 (4), pp. e0289141. Date of Electronic Publication: 2024 Apr 10 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081

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Academic Journal

SpectiCal: m / z Calibration of MS2 Peptide Spectra Using Known Low Mass Ions.

Authors : Zhang NH; Institute for Systems Biology, Seattle, Washington 98109, United States.; Deutsch EW

Subjects: Peptides*/Peptides*/Peptides*/analysis ; Software*; Calibration

Source: Journal of proteome research [J Proteome Res] 2024 Apr 05; Vol. 23 (4), pp. 1519-1530. Date of Electronic Publication: 2024 Mar 27.Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775

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Academic Journal

Beyond compliance with the 21st Century Cures Act Rule: a patient controlled electronic health information export application programming interface.

Authors : Phelan D; Computational Health Informatics Program, Boston Children's Hospital, Boston, MA 02215, United States.; Gottlieb D

Subjects: Ecosystem* ; Software*; Humans

Source: Journal of the American Medical Informatics Association : JAMIA [J Am Med Inform Assoc] 2024 Apr 03; Vol. 31 (4), pp. 901-909.Publisher: Oxford University Press Country of Publication: England NLM ID: 9430800 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

A machine-readable specification for genomics assays.

Authors : Booeshaghi AS; Department of Bioengineering, University of California, Berkeley, CA, 94720, United States.; Chen X

Subjects: Software* ; Genomics*

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 29; Vol. 40 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

A model-based hierarchical Bayesian approach to Sholl analysis.

Authors : VonKaenel E; Department of Biostatistics and Computational Biology, University of Rochester, Rochester, NY 14642, United States.; Feidler A

Subjects: Software*; Animals ; Bayes Theorem

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 29; Vol. 40 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

GINSA: an accumulator for paired locality and next-generation small ribosomal subunit sequence data.

Authors : Odle E; Department of Natural History Sciences, Graduate School of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.; Kahng S

Subjects: Software* ; Biodiversity*

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 29; Vol. 40 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

CONSULT-II: accurate taxonomic identification and profiling using locality-sensitive hashing.

Authors : Şapcı AOB; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, CA 92093, United States.; Rachtman E

Subjects: Algorithms* ; Software*; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/methods

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 29; Vol. 40 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Admix-kit: an integrated toolkit and pipeline for genetic analyses of admixed populations.

Authors : Hou K; Gogarten S ...

Subjects: Software*; Genotype ; Phenotype

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 29; Vol. 40 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

longmixr: a tool for robust clustering of high-dimensional cross-sectional and longitudinal variables of mixed data types.

Authors : Hagenberg J; Max Planck Institute of Psychiatry, 80804 Munich, Germany.; International Max Planck Research School for Translational Psychiatry, 80804 Munich, Germany.

Subjects: Software*; Humans ; Cross-Sectional Studies

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 29; Vol. 40 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

scPathoQuant: a tool for efficient alignment and quantification of pathogen sequence reads from 10× single cell sequencing datasets.

Authors : Whitmore LS; Center for Innate Immunity and Immune Disease, University of Washington, Seattle, WA 98109, United States.; Department of Immunology, School of Medicine, University of Washington, Seattle, WA 98109, United States.

Subjects: Software* ; Genome*; Sequence Analysis, DNA

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 29; Vol. 40 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN:

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