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ViromeFlowX: a Comprehensive Nextflow-based Automated Workflow for Mining Viral Genomes from Metagenomic Sequencing Data.

• Authors : Wang X; Department of Biomedical Engineering, City University of Hong Kong, Hong Kong 999077, PR China.; Ding Z

Subjects: Genome, Viral* ; Metagenome*; Humans

• Source: Microbial genomics [Microb Genom] 2024 Feb; Vol. 10 (2).Publisher: Microbiology Society Country of Publication: England NLM ID: 101671820 Publication Model: Print Cited Medium: Internet ISSN: 2057-5858

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TRIM6 facilitates SARS-CoV-2 proliferation by catalyzing the K29-typed ubiquitination of NP to enhance the ability to bind viral genomes.

• Authors : Zhou J; The Second Affiliated Hospital, School of Medicine, Institute for Hepatology, National Clinical Research Center for Infectious Disease, Shenzhen Third People's Hospital, Southern University of Science and Technology, Shenzhen, Guangdong Province, China.; Zhou Y

Subjects: COVID-19*/COVID-19*/COVID-19*/genetics ; COVID-19*/COVID-19*/COVID-19*/virology ; Genome, Viral*

• Source: Journal of medical virology [J Med Virol] 2024 Mar; Vol. 96 (3), pp. e29531.Publisher: Wiley-Liss Country of Publication: United States NLM ID: 7705876 Publication Model: Print Cited Medium: Internet ISSN: 1096-9071

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VODKA2: a fast and accurate method to detect non-standard viral genomes from large RNA-seq data sets.

• Authors : Achouri E; Department of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St. Louis, Missouri 63110, USA.; Felt SA

Subjects: Genome, Viral* ; Algorithms*; RNA-Seq

• Source: RNA (New York, N.Y.) [RNA] 2023 Dec 18; Vol. 30 (1), pp. 16-25. Date of Electronic Publication: 2023 Dec 18.Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9509184 Publication Model: Electronic Cited Medium:

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Distribution and prevalence of viral genomes in Italian populations of the invasive brown marmorated stink bug Halyomorpha halys.

• Authors : Papa G; Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore Via Emilia Parmense 84, 29122 Piacenza, Italy; Istituto per la Protezione Sostenibile delle Piante, CNR, Strada delle Cacce 73, 10135 Torino, Italy.

Subjects: Genome, Viral* ; Heteroptera*; Animals

• Source: Journal of invertebrate pathology [J Invertebr Pathol] 2023 Sep; Vol. 200, pp. 107977. Date of Electronic Publication: 2023 Aug 15.Publisher: Academic Press Country of Publication: United States NLM ID: 0014067 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Link between Monkeypox Virus Genomes from Museum Specimens and 1965 Zoo Outbreak.

• Authors : Hämmerle, Michelle¹ ; Rymbekova, Aigerim¹; Gelabert, Pere¹

Subjects: *VIRAL genomes; *MONKEYPOX; *ANIMAL mortalityROTTERDAM (Netherlands); BONN (Germany); NETHERLANDS

• Source: Emerging Infectious Diseases. Apr2024, Vol. 30 Issue 4, p815-817. 3p.

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vRhyme enables binning of viral genomes from metagenomes.

• Authors : Kieft K; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, USA.

Subjects: Genome, Viral* ; Metagenome*; High-Throughput Nucleotide Sequencing

• Source: Nucleic acids research [Nucleic Acids Res] 2022 Aug 12; Vol. 50 (14), pp. e83.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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The complexity landscape of viral genomes.

• Authors : Silva JM; Institute of Electronics and Informatics Engineering of Aveiro, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.; Pratas D

Subjects: Genome, Viral* ; Viruses*/Viruses*/Viruses*/genetics; Base Composition

• Source: GigaScience [Gigascience] 2022 Aug 11; Vol. 11.Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN:

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Microsatellite diversity and complexity in the viral genomes of the family Caliciviridae.

• Authors : Jilani, Md Gulam; Hoque, Mehboob; Ali, Safdar

Subjects: VIRAL genomes; CALICIVIRUSES; MICROSATELLITE repeats

• Source: Journal of Genetic Engineering & Biotechnology; 11/24/2023, Vol. 21 Issue 1, p1-11, 11p

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Agricola

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Metagenome-Assembled Viral Genomes Analysis Reveals Diversity and Infectivity of the RNA Virome of Gerbillinae Species.

• Authors : Du H; Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China.; Zhang L

Subjects: Genome, Viral/Genome, Viral/Genome, Viral/*genetics ; Gerbillinae/Gerbillinae/Gerbillinae/*virology ; RNA Viruses/RNA Viruses/RNA Viruses/*genetics

• Source: Viruses [Viruses] 2022 Feb 09; Vol. 14 (2). Date of Electronic Publication: 2022 Feb 09.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915

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