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Academic Journal

ViromeFlowX: a Comprehensive Nextflow-based Automated Workflow for Mining Viral Genomes from Metagenomic Sequencing Data.

  • Authors : Wang X; Department of Biomedical Engineering, City University of Hong Kong, Hong Kong 999077, PR China.; Ding Z

Subjects: Genome, Viral* ; Metagenome*; Humans

  • Source: Microbial genomics [Microb Genom] 2024 Feb; Vol. 10 (2).Publisher: Microbiology Society Country of Publication: England NLM ID: 101671820 Publication Model: Print Cited Medium: Internet ISSN: 2057-5858

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Academic Journal

VODKA2: a fast and accurate method to detect non-standard viral genomes from large RNA-seq data sets.

  • Authors : Achouri E; Department of Molecular Microbiology and Center for Women's Infectious Disease Research, Washington University School of Medicine, St. Louis, Missouri 63110, USA.; Felt SA

Subjects: Genome, Viral* ; Algorithms*; RNA-Seq

  • Source: RNA (New York, N.Y.) [RNA] 2023 Dec 18; Vol. 30 (1), pp. 16-25. Date of Electronic Publication: 2023 Dec 18.Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9509184 Publication Model: Electronic Cited Medium:

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Academic Journal

Distribution and prevalence of viral genomes in Italian populations of the invasive brown marmorated stink bug Halyomorpha halys.

  • Authors : Papa G; Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore Via Emilia Parmense 84, 29122 Piacenza, Italy; Istituto per la Protezione Sostenibile delle Piante, CNR, Strada delle Cacce 73, 10135 Torino, Italy.

Subjects: Genome, Viral* ; Heteroptera*; Animals

  • Source: Journal of invertebrate pathology [J Invertebr Pathol] 2023 Sep; Vol. 200, pp. 107977. Date of Electronic Publication: 2023 Aug 15.Publisher: Academic Press Country of Publication: United States NLM ID: 0014067 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

vRhyme enables binning of viral genomes from metagenomes.

  • Authors : Kieft K; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, USA.

Subjects: Genome, Viral* ; Metagenome*; High-Throughput Nucleotide Sequencing

  • Source: Nucleic acids research [Nucleic Acids Res] 2022 Aug 12; Vol. 50 (14), pp. e83.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

The complexity landscape of viral genomes.

  • Authors : Silva JM; Institute of Electronics and Informatics Engineering of Aveiro, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.; Pratas D

Subjects: Genome, Viral* ; Viruses*/Viruses*/Viruses*/genetics; Base Composition

  • Source: GigaScience [Gigascience] 2022 Aug 11; Vol. 11.Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Metagenome-Assembled Viral Genomes Analysis Reveals Diversity and Infectivity of the RNA Virome of Gerbillinae Species.

  • Authors : Du H; Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China.; Zhang L

Subjects: Genome, Viral/Genome, Viral/Genome, Viral/*genetics ; Gerbillinae/Gerbillinae/Gerbillinae/*virology ; RNA Viruses/RNA Viruses/RNA Viruses/*genetics

  • Source: Viruses [Viruses] 2022 Feb 09; Vol. 14 (2). Date of Electronic Publication: 2022 Feb 09.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915

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Academic Journal

Extending the Coding Potential of Viral Genomes with Overlapping Antisense ORFs: A Case for the De Novo Creation of the Gene Encoding the Antisense Protein ASP of HIV-1.

  • Authors : Pavesi A; Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, 43124 Parma, Italy.; Romerio F

Subjects: Genome, Viral* ; Open Reading Frames*; HIV-1/HIV-1/HIV-1/*genetics

  • Source: Viruses [Viruses] 2022 Jan 14; Vol. 14 (1). Date of Electronic Publication: 2022 Jan 14.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915

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Academic Journal

Haploflow: strain-resolved de novo assembly of viral genomes.

  • Authors : Fritz A; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany.; German Centre for Infection Research (DZIF), Site Hannover-Braunschweig, Braunschweig, Germany.

Subjects: Algorithms* ; Genome, Viral* ; Metagenome*

  • Source: Genome biology [Genome Biol] 2021 Jul 19; Vol. 22 (1), pp. 212. Date of Electronic Publication: 2021 Jul 19.Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN:

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  • 1-10 of  87,784 results for ""VIRAL genomes""