White matter extension of the Melbourne Children's Regional Infant Brain atlas: M-CRIB-WM.

Publisher: Wiley Country of Publication: United States NLM ID: 9419065 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0193 (Electronic) Linking ISSN: 10659471 NLM ISO Abbreviation: Hum Brain Mapp Subsets: MEDLINE

Publication: New York : Wiley
Original Publication: New York : Wiley-Liss, c1993-

Atlases as Topic* ; Diffusion Tensor Imaging*; Brain/*anatomy & histology ; White Matter/*anatomy & histology; Brain/diagnostic imaging ; Female ; Humans ; Infant, Newborn ; Male ; White Matter/diagnostic imaging

Brain atlases providing standardised identification of neonatal brain regions are key in investigating neurological disorders of early childhood. Our previously developed Melbourne Children's Regional Infant Brain (M-CRIB) and M-CRIB 2.0 neonatal brain atlases provide standardised parcellation of 100 brain regions including cortical, subcortical, and cerebellar regions. The aim of this study was to extend M-CRIB atlas coverage to include 54 white matter (WM) regions. Participants were 10 healthy term-born neonates that were used to create the initial M-CRIB atlas. WM regions were manually segmented based on T 2 images and co-registered diffusion tensor imaging-based, direction-encoded colour maps. Our labelled regions imitate the Johns Hopkins University neonatal atlas, with minor anatomical modifications. All segmentations were reviewed and approved by a paediatric radiologist and a neurosurgery research fellow for anatomical accuracy. The resulting neonatal WM atlas comprises 54 WM regions: 24 paired regions, and six unpaired regions comprising five corpus callosum subdivisions, and one pontine crossing tract. Detailed protocols for manual WM parcellations are provided, and the M-CRIB-WM atlas is presented together with the existing M-CRIB cortical, subcortical, and cerebellar parcellations in 10 individual neonatal MRI data sets. The novel M-CRIB-WM atlas, along with the M-CRIB cortical and subcortical atlases, provide neonatal whole brain MRI coverage in the first multi-subject manually parcellated neonatal atlas compatible with atlases commonly used at older time points. The M-CRIB-WM atlas is publicly available, providing a valuable tool that will help facilitate neuroimaging research into neonatal brain development in both healthy and diseased states.
(© 2020 The Authors. Human Brain Mapping published by Wiley Periodicals, Inc.)

Front Neuroinform. 2017 Jan 19;11:1. (PMID: 28154532)
Neuroimage. 2009 Jun;46(2):486-99. (PMID: 19385016)
Front Hum Neurosci. 2015 Feb 18;9:21. (PMID: 25741260)
Cortex. 2010 May;46(5):691-9. (PMID: 19775684)
Dev Psychobiol. 2012 Jan;54(1):77-91. (PMID: 21688258)
Neuroimage. 2017 Feb 15;147:841-851. (PMID: 27725314)
Dev Neurosci. 2015;37(6):515-32. (PMID: 26440296)
AJNR Am J Neuroradiol. 1989 Sep-Oct;10(5):923-8. (PMID: 2505535)
IEEE Trans Med Imaging. 2014 Oct;33(10):1997-2009. (PMID: 24951681)
PLoS One. 2013 Aug 07;8(8):e68593. (PMID: 23950872)
Neuroimage. 2008 Apr 1;40(2):570-582. (PMID: 18255316)
Neuroimage. 2011 May 1;56(1):8-20. (PMID: 21276861)
IEEE Trans Med Imaging. 2004 Jul;23(7):903-21. (PMID: 15250643)
Radiology. 2014 Oct;273(1):232-40. (PMID: 24914576)
PLoS One. 2011 Apr 14;6(4):e18746. (PMID: 21533194)
Neuroimage. 2006 Sep;32(3):989-94. (PMID: 16854598)
Neuroimage. 2019 Jan 15;185:685-698. (PMID: 29959046)
AJNR Am J Neuroradiol. 2004 Mar;25(3):356-69. (PMID: 15037456)
Neuroscience. 2014 Sep 12;276:48-71. (PMID: 24378955)
Curr Opin Neurol. 2009 Aug;22(4):362-9. (PMID: 19571751)
Neuroimage. 2002 Jan;15(1):273-89. (PMID: 11771995)
J Korean Neurosurg Soc. 2010 May;47(5):365-9. (PMID: 20539796)
Neuroimage. 2011 Mar 15;55(2):479-90. (PMID: 21168519)
Neuroimage. 2016 Jan 15;125:456-478. (PMID: 26499811)
Am J Psychiatry. 2007 Jul;164(7):1005. (PMID: 17606649)
Neuroimage. 2019 Jan 15;185:654-663. (PMID: 30016676)
Semin Perinatol. 2015 Mar;39(2):147-58. (PMID: 25724792)
Med Image Anal. 2001 Jun;5(2):143-56. (PMID: 11516708)
Hum Brain Mapp. 2002 Nov;17(3):143-55. (PMID: 12391568)
Front Neuroinform. 2016 Mar 29;10:12. (PMID: 27065840)
Neuroimage. 2016 Jan 1;124(Pt B):1254-1259. (PMID: 25941089)
Neuroimage. 2012 Aug 15;62(2):782-90. (PMID: 21979382)
J Clin Neurosci. 2012 Feb;19(2):289-98. (PMID: 22209397)
Neurosurgery. 2000 Aug;47(2):417-26; discussion 426-7. (PMID: 10942015)
Neuroimage. 2012 Feb 15;59(4):3571-81. (PMID: 22154956)
Curr Med Imaging Rev. 2019;15(5):443-452. (PMID: 32008551)
Neuroimage. 2010 Jun;51(2):684-93. (PMID: 20171290)
Neuroimage. 2006 Jul 1;31(3):968-80. (PMID: 16530430)
Acta Neurochir (Wien). 1992;115(3-4):143-8. (PMID: 1605083)
AJNR Am J Neuroradiol. 2013 Aug;34(8):1496-505. (PMID: 23518355)
JAMA Psychiatry. 2016 Dec 1;73(12):1217-1227. (PMID: 27829078)
Hum Brain Mapp. 2020 Jun 15;41(9):2317-2333. (PMID: 32083379)
Neuroimage. 2004;23 Suppl 1:S208-19. (PMID: 15501092)
BMC Pediatr. 2014 Apr 24;14:111. (PMID: 24758605)
Front Neurosci. 2016 May 19;10:220. (PMID: 27242423)
IEEE Trans Med Imaging. 2010 Jun;29(6):1310-20. (PMID: 20378467)
Neuroimage. 2018 Jun;173:88-112. (PMID: 29409960)
Neuroimage. 2002 Oct;17(2):825-41. (PMID: 12377157)
Magn Reson Med. 2009 Jun;61(6):1336-49. (PMID: 19319973)
Cortex. 2014 Jul;56:73-84. (PMID: 23137651)
Neuroimage. 2006 Oct 15;33(1):115-26. (PMID: 16860573)
Neuroimage. 2009 Oct 15;48(1):63-72. (PMID: 19573611)
J Neuroimaging. 2019 Jul;29(4):431-439. (PMID: 31037800)
Neuroimage. 2007 Aug 15;37(2):463-73. (PMID: 17560795)
IEEE Trans Med Imaging. 2013 Oct;32(10):1840-52. (PMID: 23744673)
Neuroimage. 2011 Feb 14;54(4):2750-63. (PMID: 20969966)
Med Image Anal. 2008 Feb;12(1):26-41. (PMID: 17659998)
Cereb Cortex. 2018 Nov 1;28(11):3829-3841. (PMID: 29045561)
Neuroimage. 2011 Feb 1;54(3):2033-44. (PMID: 20851191)
Neuroimage Clin. 2019;21:101630. (PMID: 30555004)
Neuroimage. 2018 Apr 15;170:231-248. (PMID: 28666878)
J Neurosurg. 2004 Nov;101(5):725-38. (PMID: 15540909)
AJNR Am J Neuroradiol. 2004 May;25(5):677-91. (PMID: 15140705)
Neuroimage. 2006 Jul 1;31(3):1116-28. (PMID: 16545965)
Neuroinformatics. 2016 Jan;14(1):69-81. (PMID: 26381159)
Neuroimage. 2012 Sep;62(3):1499-509. (PMID: 22713673)
Brain Struct Funct. 2013 Jan;218(1):105-21. (PMID: 22422148)

Keywords: MRI; atlas; neonatal; parcellation; white matter

Date Created: 20200222 Date Completed: 20211108 Latest Revision: 20211108

20240513

PMC7267918

10.1002/hbm.24948

32083379