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Advancing Drug-Target Interaction prediction with BERT and subsequence embedding.

• Authors : Yang Z; Institute of Artificial Intelligence, School of Computer Science, Wuhan University, Wuhan, 430072, Hubei province, China.; Liu J

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism ; Deep Learning*

• Source: Computational biology and chemistry [Comput Biol Chem] 2024 Jun; Vol. 110, pp. 108058. Date of Electronic Publication: 2024 Apr 05.Publisher: Elsevier Country of Publication: England NLM ID: 101157394 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-928X

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POLAT: Protein function prediction based on soft mask graph network and residue-Label ATtention.

• Authors : Liu Y; Intelligent Bioinformatics Laboratory, School of Computer and Artificial Intelligence, Wuhan University of Technology, Wuhan, 430070, China. Electronic address: .; Zhang Y

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism ; Computational Biology*

• Source: Computational biology and chemistry [Comput Biol Chem] 2024 Jun; Vol. 110, pp. 108064. Date of Electronic Publication: 2024 Apr 18.Publisher: Elsevier Country of Publication: England NLM ID: 101157394 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-928X

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Musical protein: Mapping the time sequence of music onto the spatial architecture of proteins.

• Authors : Su J; College of Music, Chengdu Normal University, No.99 Haike Road East Section, Wenjiang District, Chengdu 611130, China. Electronic address: .; Zhou P

Subjects: Music* ; Proteins*/Proteins*/Proteins*/chemistry ; Proteins*/Proteins*/Proteins*/metabolism

• Source: Computer methods and programs in biomedicine [Comput Methods Programs Biomed] 2024 Jul; Vol. 252, pp. 108233. Date of Electronic Publication: 2024 May 18.Publisher: Elsevier Scientific Publishers Country of Publication: Ireland NLM ID: 8506513 Publication Model: Print-Electronic Cited Medium: Internet

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Integrated modeling of protein and RNA.

• Authors : Liu H; Institute of Biophysics and Department of Physics, Central China Normal University, Wuhan, 430079, China.; Zhao Y

Subjects: RNA*/RNA*/RNA*/genetics ; Proteins*; Computational Biology

• Source: Briefings in bioinformatics [Brief Bioinform] 2024 Mar 27; Vol. 25 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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NTpred: a robust and precise machine learning framework for in silico identification of Tyrosine nitration sites in protein sequences.

• Authors : Datta S; Department of Computer Science, Rheinland Pfälzische Technische Universität, Kaiserslautern, 67663, Germany.; Nabeel Asim M

Subjects: Proteins*/Proteins*/Proteins*/metabolism ; Computational Biology*; Amino Acid Sequence

• Source: Briefings in functional genomics [Brief Funct Genomics] 2024 Mar 20; Vol. 23 (2), pp. 163-179.Publisher: Oxford University Press Country of Publication: England NLM ID: 101528229 Publication Model: Print Cited Medium: Internet ISSN:

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Sensitive remote homology search by local alignment of small positional embeddings from protein language models.

• Authors : Johnson SR; New England Biolabs Inc, Ipswich, United States.; Peshwa M

Subjects: Proteins*/Proteins*/Proteins*/genetics ; Proteins*/Proteins*/Proteins*/chemistry ; Algorithms*

• Source: ELife [Elife] 2024 Mar 15; Vol. 12. Date of Electronic Publication: 2024 Mar 15.Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet

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An easy-to-use computational tool for predicting 3D properties of disordered proteins.

Subjects: Proteins* ; Intrinsically Disordered Proteins*; Protein Conformation

• Source: Nature methods [Nat Methods] 2024 Mar; Vol. 21 (3), pp. 385-386.Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print Cited Medium: Internet ISSN:

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IDSL.GOA: gene ontology analysis for interpreting metabolomic datasets.

• Authors : Mahajan P; Integrated Data Science Laboratory for Metabolomics and Exposomics, Department of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, 10954, USA.; Fiehn O

Subjects: Metabolomics* ; Proteins*/Proteins*/Proteins*/genetics; Female

• Source: Scientific reports [Sci Rep] 2024 Jan 14; Vol. 14 (1), pp. 1299. Date of Electronic Publication: 2024 Jan 14.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Creation of a Curated Database of Experimentally Determined Human Protein Structures for the Identification of Its Targetome.

• Authors : Ovanessians A; School of Molecular Sciences & College of Health Solutions, Arizona State University, 850 N 5th Street, Phoenix, AZ 85012, USA2Department of Physics, Colorado School of Mines, 1500 Illinois St, Golden, CO 80401, USA, .; Snow C

Subjects: Computational Biology* ; Proteins*/Proteins*/Proteins*/chemistry; Humans

• Source: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Pac Symp Biocomput] 2024; Vol. 29, pp. 291-305.Publisher: World Scientific Country of Publication: United States NLM ID: 9711271 Publication Model: Print Cited Medium: Internet ISSN: 2335-6936

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Evaluating the use of paralogous protein domains to increase data availability for missense variant classification.

• Authors : Gunning AC; Department of Clinical and Biomedical Sciences (Medical School, Faculty of Health and Life Sciences, University of Exeter, RILD, Barrack Road, Exeter, EX2 5DW, UK. .; Exeter Genomics Laboratory, South West Genomic Laboratory Hub, Royal Devon University Healthcare NHS Foundation Trust, RILD, Barrack Road, Exeter, EX2 5DW, UK. .

Subjects: Computational Biology* ; Proteins*; Humans

• Source: Genome medicine [Genome Med] 2023 Dec 12; Vol. 15 (1), pp. 110. Date of Electronic Publication: 2023 Dec 12.Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X

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