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Academic Journal

DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction.

  • Authors : Basu S; Department of Computer Science, Virginia Commonwealth University, Richmond, VA 23284, USA.; Gsponer J

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/instrumentation ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W141-W147.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families.

  • Authors : Oteri F; Sorbonne Université, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 75005 Paris, France.; Sarti E

Subjects: Computers* ; Evolution, Molecular* ; Phylogeny*

  • Source: Nucleic acids research [Nucleic Acids Res] 2022 Jul 05; Vol. 50 (W1), pp. W412-W419.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

AllerCatPro 2.0: a web server for predicting protein allergenicity potential.

  • Authors : Nguyen MN; Bioinformatics Institute, 30 Biopolis Street, #07-01, Matrix 138671, Singapore.; IFCS Programme, Singapore Institute for Food and Biotechnology Innovation, Agency for Science, Technology and Research, Singapore.

Subjects: Allergens*/Allergens*/Allergens*/chemistry ; Allergens*/Allergens*/Allergens*/immunology ; Computers*

  • Source: Nucleic acids research [Nucleic Acids Res] 2022 Jul 05; Vol. 50 (W1), pp. W36-W43.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations.

  • Authors : Bayarri G; Institute for Research in Biomedicine (IRB Barcelona). The Barcelona Institute of Science and Technology. Baldiri Reixac 10-12, 08028 Barcelona, Spain.; Andrio P

Subjects: Internet* ; Proteins*/Proteins*/Proteins*/chemistry ; Software*

  • Source: Nucleic acids research [Nucleic Acids Res] 2022 Jul 05; Vol. 50 (W1), pp. W99-W107.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

AroCageDB: A Web-Based Resource for Aromatic Cage Binding Sites and Their Intrinsic Ligands.

  • Authors : Li J; Institute of Pharmaceutical Sciences, Faculty of Chemistry and Pharmacy, Albert-Ludwigs-Universität Freiburg, Hermann-Herder-Straße 9, D-79104 Freiburg, Germany.; Moumbock AFA

Subjects: Internet* ; Proteins*; Binding Sites

  • Source: Journal of chemical information and modeling [J Chem Inf Model] 2021 Nov 22; Vol. 61 (11), pp. 5327-5330. Date of Electronic Publication: 2021 Nov 05.Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium:

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Academic Journal

ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts.

  • Authors : Adiyaman R; School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, UK.; McGuffin LJ

Subjects: Computers* ; Internet* ; Models, Molecular*

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W589-W596.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

Web-Based Computational Tools for the Prediction and Analysis of Posttranslational Modifications of Proteins.

  • Authors : Ivanisenko VA; Institute of Cytology and Genetics SB RAS, Novosibirsk State University, Novosibirsk, Russia. .; Ivanisenko TV

Subjects: Internet* ; Protein Processing, Post-Translational* ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2019; Vol. 1934, pp. 1-20.Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium:

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Academic Journal

DISTEVAL: a web server for evaluating predicted protein distances.

  • Authors : Adhikari B; Department of Computer Science, University of Missouri-St. Louis, 312 Express Scripts Hall, St. Louis, MO, USA. .; Shrestha B

Subjects: Internet* ; Models, Molecular* ; Proteins*/Proteins*/Proteins*/chemistry

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Jan 06; Vol. 22 (1), pp. 8. Date of Electronic Publication: 2021 Jan 06.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

CASTp 3.0: computed atlas of surface topography of proteins.

  • Authors : Tian W; Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, USA.; Chen C

Subjects: Internet* ; Protein Conformation* ; Software*

  • Source: Nucleic acids research [Nucleic Acids Res] 2018 Jul 02; Vol. 46 (W1), pp. W363-W367.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

HDXmodeller: an online webserver for high-resolution HDX-MS with auto-validation.

  • Authors : Salmas RE; Department of Chemistry, Britannia House, King's College London, SE1 1DB, London, UK.; Borysik AJ

Subjects: Hydrogen Deuterium Exchange-Mass Spectrometry* ; Internet*; Proteins/Proteins/Proteins/*metabolism

  • Source: Communications biology [Commun Biol] 2021 Feb 15; Vol. 4 (1), pp. 199. Date of Electronic Publication: 2021 Feb 15.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium:

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